PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS25960 FitnessBrowser__BFirm:BPHYT_RS25960 (304 amino acids)

SeqID: BPHYT_RS25960 FitnessBrowser__BFirm:BPHYT_RS25960
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS25960 FitnessBrowser__BFirm:BPHYT_RS25960
MLNPQPVPSYLIQSEAVRERFDRLKSREVILEVKDLGKRFKAAQGECTALDGISFKTHRR
EFVCVIGPSGCGKSTLIRILAGLEAQTSGSVLLDGKPVQGPGADRGMVFQGYTLFPWLTV
KKNVMFGLKMNGHSTLHAEREALQWLDLVGLTKFANAYPHQLSGGMKQRVAIARALANRP
RILLMDEPFGALDAQTRAKMQTHLLDIWRNIDVTVLFITHDLDEAIFLADRILVLKANPG
EVQELIEVPVPRPRDYSQVTSPEFLATKARLEALIHPPTETRDDEDDVVKPHMIRMTDVA
DNVE