PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS25965 FitnessBrowser__BFirm:BPHYT_RS25965 (323 amino acids)

SeqID: BPHYT_RS25965 FitnessBrowser__BFirm:BPHYT_RS25965
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 34396000: Taurine transport system permease protein tauC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS25965 FitnessBrowser__BFirm:BPHYT_RS25965
MAVIDRTEWFAVRRELSSRGKWFLGAGSFLLPLFVWCLVSYVPFIWHPQVLIDSPGSVDY
FQPGMRVDKDVFADELAHARDAHAALPAGEPVNPVYLPAPHEVLRAFYTAFATPPASRDG
VWLHQSLWHSIQVIFWGFVLSSVIGVPIGIVCGTYSAIARLQEPFFEFFRYLPAPAFGAL
MVAILGIYDGPKIAIIVIGTLFQQVLIVANTTRKLEYGLFEAAMTLGTKKLKLLTHVVIP
GILPDLYRDQRILLGWAWTYLIVAELVGTSSGITWYITQQARYEHFDNVYAAIMMIGIIG
LGTDLVLAYLGRRLFPWDRTLKA