PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS27425 FitnessBrowser__BFirm:BPHYT_RS27425 (433 amino acids)

SeqID: BPHYT_RS27425 FitnessBrowser__BFirm:BPHYT_RS27425
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00714: NA_DICARBOXYL_SYMP_2 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 67462316: Aerobic C4-dicarboxylate transport protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS27425 FitnessBrowser__BFirm:BPHYT_RS27425
MRVAKPLRSLYVQVLLGVVLGIALGHFLPEVGARLRPFSDAFVGLVKMMIAPIVFCTIVS
GITSLASGKAIARTIFQALGLFYLLTAVALALGLVTAFVLQPGAGMHIDAQHLDTSILAQ
YGKHAQPRGLVAFALNVIPETMLGALDKGEVLPVLLLSLLFGFSLNAYPKAGRPVLALID
GIAQTLFRILAMIMRLAPLGAFGAMAFTVGRFGIRSVGSLGMLMVSFYVACLLFVALVLA
PLARLHGFALWRLLRYLREELLIVLATSSTEPVLPRLIAKLEALGCDKGVVGLVLPAGYS
FNLDGTAIYLTLASVFIAQACDVPLTAPQIAIMLAVMLLTSKGAAGVSGSGLVALVATLT
VIPDLPVAGVALLVGIDRFMSEARALTSVISNACAVIFVSMWEGACDRTRLAQMLGAMAP
GGADRSARNTPGT