PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS27440 FitnessBrowser__BFirm:BPHYT_RS27440 (432 amino acids)

SeqID: BPHYT_RS27440 FitnessBrowser__BFirm:BPHYT_RS27440
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS27440 FitnessBrowser__BFirm:BPHYT_RS27440
MNSKTHATLSFSDSDQTIDLPIYQGTLGPDVIDIRKLYGQTGKFTYDPGFMSTAACNSEI
TYIDGDKGELLYRGYPIDNLAQNADFLETCYLLLKGELPNAQQKEEFVKTVTQHTMVHDQ
MHFFFRGFRRDAHPMAILVAAVGALSAFYHDSLDIGNPLHRDISAIRMIAKLPTLVAMAY
KYTVGQPFVYPKNDLSYSANFMRMMFSSPAQEYKVNDVLVRALDRILILHADHEQNASTS
TVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLEEIGSVDNIPEFIAKVKDKDS
GVKLMGFGHRVYKNYDPRAKLMRETCHEVLEELGLHDDPLFKLAMALEKIALEDEYFVSR
KLYPNVDFYSGIVQRALGIPTAMFTCIFAMARTVGWIAQWNEMIADPEQKIGRPRQLFVG
ESQREATPLAKR