PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS28020 FitnessBrowser__BFirm:BPHYT_RS28020 (272 amino acids)

SeqID: BPHYT_RS28020 FitnessBrowser__BFirm:BPHYT_RS28020
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595942: probable enoyl-CoA hydratase/isomerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS28020 FitnessBrowser__BFirm:BPHYT_RS28020
MIELDYADDGAVAQLTLKRPPANAFTPEGLLQLQQTVERLNGEARVRAIVITGDGPKFFS
AGADLNTFADGNREVARTAAARFGAAFETLQNARPVVIAAINGYAMGGGLECALACDIRI
AEQHALLALPETAVGLLPCGCGTQTLPWLVGEGWAKRMILTGERVDAATALRIGLVEEVV
EKGAARDAALVMAARVATLSPQAVGFSKTLIHQGRSGVPRAAALALERERFVDLFDGADQ
REGVNAFLEKRPPRWQVTQSAQTDASQPEMRQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory