Running PSORTb v3.0 on BPHYT_RS29180 FitnessBrowser__BFirm:BPHYT_RS29180 (306 amino acids)
SeqID: BPHYT_RS29180 FitnessBrowser__BFirm:BPHYT_RS29180 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- CytoplasmicMembrane [7 internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 136751: Cytoplasmic membrane integral membrane protein] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 10.00 Cytoplasmic 0.00 Periplasmic 0.00 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: CytoplasmicMembrane 10.00 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
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>BPHYT_RS29180 FitnessBrowser__BFirm:BPHYT_RS29180 MNTLSPPLKGGTPPSRARPRRRRTAFTPARLGVYAFLLTAALFFLLPLYVMLVTSVKPMN EIRLGNLLAFPTHFTLSAWSAAWQSACTGLDCNGIQVGFWNSVRIVVPSTILSIAIGAVN GYALSFWRPRGAGLLFGVLLMGAFIPVQVMVYPLVRVLASVHLFSSLPGIVVIHTIFGMP VMTLLFRNYYVSIPQELFKAARIDGGGFWRIFVQLMLPMSTPIIVVAVIMQVTGIWNDFI LGLVFAGTKNLPMTVQLNNIINTTTGERLYNVNMAATILTSMVPLAVYFVSGRWFVRGIA SGAVKG
Lawrence Berkeley National Laboratory