PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS29355 BPHYT_RS29355 pyruvate dehydrogenase subunit beta (334 amino acids)

SeqID: BPHYT_RS29355 BPHYT_RS29355 pyruvate dehydrogenase subunit beta
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599346: acetoin catabolism protein AcoB[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS29355 BPHYT_RS29355 pyruvate dehydrogenase subunit beta
MARKITFSQAINEALSQEMARDETVIVMGEDNAGGAGSPGEQDAWGGVLGVTKGLFHKYP
GRVLDTPLSEGGYIGAAVGAAACGMRPVAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAV
TPVVIRAMQGAGLRAAAQHSQMLTSLFTHIPGLKVVCPSTPYDAKGLLIQAIRDNDPVIF
CEHKLLYSREGDVPEESYAIPFGEANVVRDGDDATIITYGRMVHYATEAAEKLAKDGIQV
EVIDLRTTSPLDEETILESANRTGRVVVVDEANPRCSIATDISALIAQRAFHSLKAPIEM
VTAPHTPAPFAGVLEDMYIPSAAQIAEAVLKVRA