PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS30140 FitnessBrowser__BFirm:BPHYT_RS30140 (395 amino acids)

SeqID: BPHYT_RS30140 FitnessBrowser__BFirm:BPHYT_RS30140
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS30140 FitnessBrowser__BFirm:BPHYT_RS30140
MAHQPQIKIPATYMRGGTSKGVFFRLQDLPEAAQVPGAARDALLMRVIGSPDPYGKQIDG
MGGATSSTSKTVIIAKSSRPDHDVDYLFGQVSIDKAFIDWTGNCGNLSAAVGPFAISAGL
VDPSRIPRDGVAVVRIWQANIGKTIIGHVPMTDGAVQETGDFELDGVTFPAAEVQLEFMD
PAAEEEGAGGSMFPTGNLVDDLEVPGVGTLKATMINAGIPTIFVDAESIGYKGTELQDAI
NSDDKALAMFETIRAHGALRMGLIKNLDEIATRQHTPKVAFVAKPAAYVASSGKQIGAGD
VDLLVRAMSMGKLHHAMMGTAAVAIGTAAAIAGTLVNLAAGGGAKESVRFGHPSGTLRVG
AEASESGGEWTVTKAIMSRSARVLMEGWVRVPQER