PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS31205 FitnessBrowser__BFirm:BPHYT_RS31205 (347 amino acids)

SeqID: BPHYT_RS31205 FitnessBrowser__BFirm:BPHYT_RS31205
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS31205 FitnessBrowser__BFirm:BPHYT_RS31205
MNAPHVMAPLVEVDHVSRRFVRRLNYAERIAGWLGARAEEQIVHAVDDVSLTIHRGEVLG
LVGESGCGKSTLGRMLAGIGAPSSGSIRTLEKIAEQSAPGSEHDGTRAGKRTSRHRLATQ
MIFQDPLSSLNPRKRVRDIIGEAPLVHGIVERKQLDAYVVDVMERVGLNPDFRERFPHQF
SGGQRQRIGIGRALAVKPDFLICDESIAALDVSIQAQIINLFMQLRRDLGLTYLFISHDL
GVVEHISDRVAIMYLGRIVETAPTVELFANPQHPYTIALLAQVPRLSNRKRQFESIQGEI
PSPLAPPDGCHFHPRCPHATQRCRTERPLLRQSGAAHQVACHLVEVR