PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS31615 FitnessBrowser__BFirm:BPHYT_RS31615 (610 amino acids)

SeqID: BPHYT_RS31615 FitnessBrowser__BFirm:BPHYT_RS31615
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130693: Pyruvate dehydrogenase [cytochrome]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS31615 FitnessBrowser__BFirm:BPHYT_RS31615
MAQTVGDFIIGRLHAWGVRRIYGYPGDGINGVFGALNRAQSEARNSKSGNPTQPIEFVQV
RHEEMAAFMASAHAKFTGELGVCIATSGPGASHLITGLYDARMDHMPVLAIAGQQARAAL
GGHYQQELDLASMFKDVAGAFVEQASVPAQVRHLVDRAVRTALAERKVTALILPNDLQDL
RYEAPDRKHGTLHSGVGYRAPRLVPYPDDLQQAAEVLNAGKKVAILVGAGALHATDEVIA
IAEKLGAGVAKALLGKAALPDDLPWVTGAIGLLGTKPSYDLMMECDTLLMIGSGFPYSEF
LPKEGAARGVQIDLKADMLSLRYPMEVNLVGDSVETLRALLPLLEDKKDRAWRGKIEGWT
KDWWKTLDKRAHEAGKDAVNPQRTVWELSKRIPADSIVTSDSGSCANWYARDLKVQRGMM
CSLSDGLASMGAAVPYAIAAKFAFPERPVIALVGDGAMQMNNMAELITVSKYWKDWANPR
WICMVLNNSDLNQVTWEQRAVEGDPKFEASQDIPSVPYHKFAELIGLKGIYVDNDEQMGA
AWDEALAADRPVVIEVKSDPNIAPLPPHITLAQAKAFASTLMKGDPNEGNVIVETAKQVL
GAVLPGHHDK