PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS31750 BPHYT_RS31750 ABC transporter (258 amino acids)

SeqID: BPHYT_RS31750 BPHYT_RS31750 ABC transporter
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 71164840: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    6.29
    Cytoplasmic            3.70
    Periplasmic            0.01
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS31750 BPHYT_RS31750 ABC transporter
MKKNSIRLSVKGVSKRFGGLQALSDVGLQIDEGSIYGLIGPNGAGKTTFFNVITGLYSPD
SGEFELDNKPYTPTAVHKVAKTGIARTFQNIRLFGGMTALENVMVGQHVRTKQGLIGAVL
QTLSERREERAIRERAIELLDYVGIAQYADYTARNLSYGHQRRLEIARALATDPKLLALD
EPAAGMNATEKLELTGLLKQIRADGRTILLIEHDVKLMMGVCNGMTVLDYGKVIAEGLPR
DVQRDPKVIEAYLGTGVQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory