PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS31860 FitnessBrowser__BFirm:BPHYT_RS31860 (393 amino acids)

SeqID: BPHYT_RS31860 FitnessBrowser__BFirm:BPHYT_RS31860
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 462590: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS31860 FitnessBrowser__BFirm:BPHYT_RS31860
MDEAALLYSPRLLDIGGGAVRRTAALCRRFGISHPLIVTDPYMIKSKLICVLTDTLSAAS
IEFAIFSDTVADPTDEVVDVGVELLNSGNFDAVIAFGGGSPIDTAKAINILAHARRTEPS
ACMRDYKMPELADHAALPLIAIPTTAGTGSEVTRFTVITDIGLDEKMLISGLGALPIAAI
VDYQLTLDMPPRLTADTGIDSFTHALEAFVSRHANANSDLFARSALSLIGTHLKTAYTEP
HNHAAREAMMLGATHAGIACSIAPVALVHGMARPIGAHFHVPHGLSNAMMLPAVTAYSLR
SALPRYAEVARLAGFATASDNDEEAGLKLVEGLREMNRDLTVPSPRAYGINPDGWHAKKT
LMAEQALASGSPANNPKVPTKADIETLYEQVFE