PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS32805 FitnessBrowser__BFirm:BPHYT_RS32805 (756 amino acids)

SeqID: BPHYT_RS32805 FitnessBrowser__BFirm:BPHYT_RS32805
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS32805 FitnessBrowser__BFirm:BPHYT_RS32805
MLKRRTFLLGGAGAVGALVVGWSVLPPGQRLTTSMPLPAQGSQVALNGWVKIAADNSVTI
MMCKAEMGQGIHTGLAMLLAEELDADWSQVRVEDSPIDKIYNSVQSIIDDLPFRPDDDST
VKRTTVWMTRKLVREAGTMMTGGSSSINDLWTPMREAGASARAMLIGAAAAQWKVPPGEC
RAEGGQVLHPSGHKASFGELSSMAAQQALPRKVTLKDPANFKLIGKPLRRIEAASKINGT
ARFGIDVLPDGLLYASVEMCPTLGGSVAKFDATAAGKMPGFIKAFAVAPYNGGTGGVAVI
ADNPFRAMNAVAAVDVTWHDGPAAKLSNADADRRLAQALDDNDGHAYYHLGDVDAALTRA
ARTVSAEYRAPYLAHGAVEPLNCTVQVADGAATVWVSTQMPGLARHHVAKVLDLDADKVD
VQTFLLGGAFGRRLELDFIAQAAAIAREGGGRPVQTLWSRAQDFTHDFYRPACLSRLKAG
FDNDGKLVAWQAASASQAIVPEALARYYGAPRLPIDKTTCEGAFDQPYEWPAARVAHKIV
ELPVPVGFWRSVGHSHQAFFTEGFTDELAVATGKDPIAFRAALLEQHPRHLAVLKRAAAL
SDWEHPLTHAADGAPRARGVALHEAFGSVVAQVAEVSIGPGKKIRVHRVVCVIDCGIPVN
PNLIRQQMESAVVFGLSAALQDEITLVNGQVQQKNFLDFPVVRIDDCPVIDTDIMPSQLH
PQGVGEAGVPPVAPAVANAVFKLTGQRLRSLPLKLA