PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS33430 FitnessBrowser__BFirm:BPHYT_RS33430 (999 amino acids)

SeqID: BPHYT_RS33430 FitnessBrowser__BFirm:BPHYT_RS33430
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS33430 FitnessBrowser__BFirm:BPHYT_RS33430
MGTSFDEQQGAGVDELHDNGTSALKRAPHVATPFTGTAAVMQALEADLRSHVRGEVRFDQ
GSKALYAADASNYRQVPLAVVVPADVDDLLATLAACRRNDVPFLPRGGGTSQNGQCVNVA
VVADASKYVNRVVSVDPVARVAIVEPGVVCDTLRDAAEQHGLTFAPDPATHSRCTLGGMI
ANNSCGAHSVMAGKTVENVEALEIATFDGARFWVGPTSDQELEHIIAAGGRQGEIYAALK
QLRDTYAEQIRARFPQIKRRVSGFNLDQLLPENGFNVARALVGTEGTCALTLQAKVRLVK
SPAMRVIVVVGFTDIYTAADAVPHFMRCEPIAVEGLDRAIIRGLQARGLKKDEIALLPEG
DAWVVLEFGADTQDDVMLKARAAAACFASGEAGPNVSAMLVEDRALQAKVWSIRETGASA
VALSVDSGTPDPVVGWEDAAVDPLRLGDYLRAFQALVDRYGYETSLYGHFGDGCVHARIT
FDLRSAEGVATWRKFLREAAELVVEFGGSLSGEHGDGQAKAEFLPIMYGPELMQAMEQFK
AIWDPANRLNPGKVVHAYRADENLRMGPAYKPVTLQTRLTFASQEGEGFQREIERCIGMG
KCRSLEGGTMCPSYRATREEKYSTRGRAHLFWEMLQGDVIADGWQSREVKEALDTCLACK
GCKSDCPTHTDMASYKAEFLSHYYETNRRPRQALFMGRIGEWAPWAARFPRLTNFMTSAP
CLSSFGKWLAGVAQTRELPRFADATYRQIARRSPQSARDARGDVKKVILWVDTFNDHFTP
EIAQAAADVLKQLGWHVVLPKNRLCCGRPLYDFGLLERARELLTHILDDLADDIAAGVPL
VGLEPGCLSVFKDELLKQLPNHALAKKLSAQTFLFSDFVARQSFDWPTLAADVIVHGHCH
QKALFGMQGDTALLNKLGVKWKLLDTGCCGMAGSFGFNAEHHALSTKIGEDKLFPAVRAA
SVETIVLTNGFSCREQIEQGTGRHAMHIAQLAQRALAAR