PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS34250 FitnessBrowser__BFirm:BPHYT_RS34250 (349 amino acids)

SeqID: BPHYT_RS34250 FitnessBrowser__BFirm:BPHYT_RS34250
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141669: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS34250 FitnessBrowser__BFirm:BPHYT_RS34250
MSFAKGPLMARRLFRTSLSVTAAAACFAGLAVSGAAQAADSGKIGLGLPLLTSPFWQSYN
NYLPKYAKESGLDILAPVNSNGDPVQQITDMNNLLNLGAKGIVVGPLDSAAISRALDAAA
AKNVPVVAVDVAPTQGKVAMVVRADNHAYGEKACKYIGEHVKSGKVVQIMGDLASVNGRD
RSEAFRSCLKGYPGLTLLEIPASWKGDVAATALDSLLTANPDVKAIYMQAGGVYLSPTLQ
TLRRKQMLFPAGDAKHVVIVSNDGIPQEFDAIRRGDIDATVSQPADSYAKYGLFYIKAAL
AGQTFKPGPTDHGSNIIQLAPGILEDQLPAPLVTKSNVDDKALWGNTVK