PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS34990 FitnessBrowser__BFirm:BPHYT_RS34990 (421 amino acids)

SeqID: BPHYT_RS34990 FitnessBrowser__BFirm:BPHYT_RS34990
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 113644: Rubredoxin-NAD(+) reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS34990 FitnessBrowser__BFirm:BPHYT_RS34990
MTDAAAAKAQTAHAGLEAPRTIVVIGGGQAAGWVVKTLRKEGFDGRLVMIADEVHLPYER
PPLSKAVLAGEADIDTVRLVKPDDFEALNVEAWQPDCATSIDREQRIVRTQSGREVQYDR
LVIATGGAARKLPESLVKTSHIAYLRTLDEAVALGERLRASKRVLVVGGGWIGLEVAATA
RKLGVDATVVEGAPRLCARSLPPMVSGFLLDLHRANGVDVRLNASLVSLADHPNDAKRIR
ATFADGSTLDADFAVAGIGLTPHTALAQAAGVKVDDGIVVDHFGATDDPRIFACGDVANH
PSAWLKRRVRLESWANAQNQAIAAAKALLGTFEPYADIPWFWSDQYDVNLQILGDIPGDA
QLAVRGDLPGKRATLFHLEDSAIRGVIAINTPRELKLSRKWMNQGRTIDLATLTDASTAL
A

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory