PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS35445 FitnessBrowser__BFirm:BPHYT_RS35445 (546 amino acids)

SeqID: BPHYT_RS35445 FitnessBrowser__BFirm:BPHYT_RS35445
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS35445 FitnessBrowser__BFirm:BPHYT_RS35445
MEPSAHVDTFARDNLPPQDQWPVFLLDNPDVAYPARLNCASELLDRTIDAGHRDDPAIWS
DVDGAPRATTYGELLALVNRSAHVLVDEMGLQPGNRVLLRGPNTLHMAVTALAALKVGLV
VVPTMPLLRAKELKQIIDKAQVGAALCDARLTAELARCSDPEDEFYCAGLMQTRLFHDDS
PDSLDTLAVNKPDHFTACDTAADDVCLIAFTSGTTGAPKGCMHFHRDVVAMCDLFPRHVL
KPTSSDIFCGTPPLAFTFGLGGLLCFPLRVGASTVLIEKLTPETLLQTVERFHATVMFTA
PTFYRQMAPLVAHHDVSSLKKTVSAGEALPDSTRRLWRDATGIDMIDGIGGTELIHIFIS
AQGDEIRPNAIGRAVPGYAVQAVDDDMQPVAPGTIGKLAVRGPTGCRYLADERQMKFVRD
GWNLPGDSVYLDEDGYVFYQARADDMIVSAGYNISGPEVESVLLQHDAVSECGVIGVPDE
TRGQIVKAFVVVNPGYERDDKLVAQLQEFVKNSVAPYKYPRDIVFVDSLPRTETGKLKRF
ELRTMA