PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS35765 FitnessBrowser__BFirm:BPHYT_RS35765 (628 amino acids)

SeqID: BPHYT_RS35765 FitnessBrowser__BFirm:BPHYT_RS35765
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [16 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS35765 FitnessBrowser__BFirm:BPHYT_RS35765
MSNHALNPADAGVPLHAASMPRRWLRSFDRGLIALVEVCAAALLMMEIVVMFAGVVCRYV
LHQPLVWSDELAGILFLWLAMLGAVLALRRGEHMRMTALVSRLSPQRRAFVDTLAIAASI
ALLALLIAPAYDYASGEAAIVTPALQISNAWRALALPIGAALMLLVGMIRLAQVSRVRDV
VIVLAITAVLAAVAVFAGPWFQTLGKPNLVIFFVGVVAIGIFSGVPIGFSFALATFGYLG
LSTFTPLEVVVGRMDEGMSHLVLLAVPLFVFLGLLIEMTGMARAMIEFLASLVGHVHGGL
SFVLIGAMYLVSGISGSKVADMAAIAPVLFPEMKKRGASEGDLVALLATTGAQSETIPPS
IVLITIGSVTGLSISALFTAGMLPGAVLALILCVVVWWRYRKEDLSGAQRFSKRQIGRLF
VVSLPALALPFVIRMAVVEGVATATEVSTIGIAYSMLIGLVVYRRFEWRRLGRMLVDAAT
LSGAILFIIGCATAMAWALTQSGFSQDLAQLMGSMPGGAYGFLAVSIVVFVMLGSVLEGI
PAIVLFGPLLFPIARLAGVHEVHYAIVVILSMGVGLFSPPFGVGYYSACAISKVNPDAGI
RPIVGYMGALIVGLIVVAAIPWISIGFL