PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS02160 FitnessBrowser__Koxy:BWI76_RS02160 (510 amino acids)

SeqID: BWI76_RS02160 FitnessBrowser__Koxy:BWI76_RS02160
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS02160 FitnessBrowser__Koxy:BWI76_RS02160
MLTPYISMAGIGKSFGPVHALKSVDLTIYPHEIHALLGENGAGKSTLMKVLSGIHEPTKG
TITINNVNYDKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNVIDWR
EMRVRAAMMLLRVGLKIDLDEKVVNLSISHKQMLEIAKTLMLDAKVLIMDEPTSSLTNKE
VDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSEVNNDDIVRL
MVGRELQNRFNAMKESTGNIVRETVFEVKNVTSHDKKKVRDISFSVNRGEILGFAGLVGS
GRTELMDCLFGVDKRSGGEIYLNGKAISPRSPLDALKKGMGYITESRRENGFFPNFSIAQ
NMAVSQSLKRGGYKGAMGLFREGDERKTAEEQRKLLALKCHSVDQNITELSGGNQQKVLI
SKWLCCSPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIIAVCDRIA
VFCEGRLTQILTNRDDLSEEEIMAWALPQE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory