PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS02960 FitnessBrowser__Koxy:BWI76_RS02960 (551 amino acids)

SeqID: BWI76_RS02960 FitnessBrowser__Koxy:BWI76_RS02960
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 731000: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS02960 FitnessBrowser__Koxy:BWI76_RS02960
MNTLPLWWQNGVIYQIYPKSFQDTTGTGTGDLRGVTSRLDYLQKLGVDAIWLTPFYVSPQ
VDNGYDVANYTAIDPTYGTLDDFDELVAQAHARGIRIVLDMVLNHTSTEHAWFREALNKE
SPYRQFYIWRDGEPTTPPNNWRSKFGGNAWQWHAESEQYYLHLFAVEQADLNWENPAVRA
ELKKVCEFWADRGVDGLRLDVVNLISKDQTFPSDTDGDGRRFYTDGPRAHEFLQEMSRDV
FTPRGLMTVGEMSSTTLAHCQQYAALDGGELSMTFNFHHLKVDYPGGEKWTLARPDFVAL
KSLFRHWQQGMHNRAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYI
YQGEEIGMTNPHFMRITDYRDVESHNMFIERAAQGQDPDELLAILASKSRDNSRTPMQWN
NADHGGFSAGEPWIALCDNYREINAEAAQADPESVFYTYQQLIALRKSAPVLTWGDYQDL
LPEHPSLWCYRRQWQGQTLVVVANLSREFQRWQPEAMSGEWGMLMSNYAEAANRPAAMTL
RPFEAVWWLQE