PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS03320 BWI76_RS03320 alcohol dehydrogenase (352 amino acids)

SeqID: BWI76_RS03320 BWI76_RS03320 alcohol dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135560: L-threonine 3-dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS03320 BWI76_RS03320 alcohol dehydrogenase
MKTFGYAAQNAQSGLAPMSFERRALRDDDLAIEINYCGVCHSDLHQIRDDWRSWNPTVYP
SIPGHEIIGTVIEVGPNVTHYKIGDAVAVGTIVDSCRVCDQCRRGEEQMCREFPTMTYNS
SDRHDGKTTLGGYSKHIIVREEFVLRMPEGLDAARAAPLLCAGITVYSPLRTWNVGPGSR
VGVIGIGGLGHLAVKFAAGLGAHVTVITRTEAKTAEARALGADTTLISNSDDAMKAATSS
FDVIIDTIPVEHDVSAYVQLLDVEGALVIVGALGNMAGFNSLPLIMGRRCITGSPSGGIA
ETQEMLDFCGKTGILPECEMIAIAEINEAFERMERGEVHYRFVIDMATLSDA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory