PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS03535 FitnessBrowser__Koxy:BWI76_RS03535 (462 amino acids)

SeqID: BWI76_RS03535 FitnessBrowser__Koxy:BWI76_RS03535
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS03535 FitnessBrowser__Koxy:BWI76_RS03535
MKRIPEPFRIKMVENIRMTTFDDRVKALEEAGYNPFLLNSQDVYIDLLTDSGTGAMSDHQ
WAGLMMGDEAYAGSRNYQHLCEKVKEIIGYPYTIPTHQGRGAEQILFPSLIARRKSAHPV
FISNFHFDTTAAHVELNGAKAINVVTPKAFDTTSWYDWKGNFDIVLLKATIAEHGAENVA
AIITTVTCNSSGGQPVSLANMREVYQIARQNNIPVVIDSARFCENAWFIKQREEGYADKS
VKEIILEMYQYGDMLTMSAKKDPMVNIGGLCCFRDDEDLFNEVRIRCVPMEGFVTYGGLA
GRDMEALAIGLEEGTNEDYLAYRINQVEYLGERLREGGIPIQYPTGGHAVFVDAKLLLPH
IPPEQFPAHALNNELYLEAGIRSVEIGSLLLGRDPQTGKQKASPMELLRLTIPRRVYTND
HMDYIADALIAVKARAATIKGLTFTYEPPVLRHFVARLKPVK