PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS04585 FitnessBrowser__Koxy:BWI76_RS04585 (500 amino acids)

SeqID: BWI76_RS04585 FitnessBrowser__Koxy:BWI76_RS04585
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS04585 FitnessBrowser__Koxy:BWI76_RS04585
MTIFNNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEI
THICRDANYDDKCAGMVVWLHTFSPAKMWINGLTILNKPLMQFHTQFNAALPWDSIDMDF
MNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGAWMRQAVSKQDTRHLKVCR
FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNAVSDGEISALIDEYESSYRLT
PAVQIHGDKRQNLLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG
YGFAGEGDWKTAALLRIMKVMATGLQGGTSFMEDYTYHFEKGNDLALGSHMLEVCPTIAT
AEKPILDVQPLGIGGKADPARIIFNTQTGPAIVASLIDLGDRYRLLVNTIETVKTPHELP
KLPVANALWKAHPDLRTASEAWIIAGGAHHTVFSHALTLDDMRQFAELQDIELTVIDNET
RLPSFKDALRWNEVYYGSKR