PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS04950 FitnessBrowser__Koxy:BWI76_RS04950 (796 amino acids)

SeqID: BWI76_RS04950 FitnessBrowser__Koxy:BWI76_RS04950
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118581: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS04950 FitnessBrowser__Koxy:BWI76_RS04950
MAETKSQQSRLLVTLTALFAAFCGLYLLAGGAWLVALGGSWYYPVAGLVMLAVTVLLFRG
KRSALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLPIPSSGA
VAGLVVALLISGGILTWAGFNDPQEVNGTLSADATPAAPISEVADGDWSAYGRNQEGQRY
SPLKQINADNVKNLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD
AATGKEKWHFDPQLNADPSFQHVTCRGVSYHEAKADNAPADVVADCPRRIILPVNDGRLF
AINAETGKLCESFANKGILNLQTNMPVTTPGMYEPTSPPIITDKTIVIAGAVTDNFSTRE
PSGVIRGFDVNTGKLLWAFDPGAKDPNAIPDDEHHFTLNSPNSWAPAAYDAKLDLVYLPM
GVTTPDIWGGNRTPEQERYASSIVALNATTGKLAWSYQTVHHDLWDMDMPSQPTLADIDV
NGKTVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVAKTQPFSDLSFRPK
KDLTGADMWGATMFDQLVCRVIFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN
RQVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGSGTEAGIQPQYGVPYGVTLNPFLSPF
GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSLPFPMPVKLPFTMGMPMLGGPISTAG
NVLFIGATADNYLRAYNMSNGEKLWQARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT
KMGDYIVAYALPDDAK