PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS05300 FitnessBrowser__Koxy:BWI76_RS05300 (712 amino acids)

SeqID: BWI76_RS05300 FitnessBrowser__Koxy:BWI76_RS05300
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131957: lysine decarboxylase 1 [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS05300 FitnessBrowser__Koxy:BWI76_RS05300
MNIIAIMGPHGVYYKDEPIKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWD
EYSVDLCSDINRLNEYLPLYAFINAHSTMDVSSQDLRMTLWFFEYALGLAEEIATRIGQY
TREYLDNITPPFTKALFNYVQEGKYTFCTPGHMGGSAYQKSPVGCLFYDFFGGNTLKADV
SISVTELGSLLDHSGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLI
DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTRDSIQQKVNTTGGAGWPVH
AVITNSTYDGLLYNTTWIKETLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRIPGKVIF
ETQSTHKMLAALSQASLIHIKGSYDEDTFNEAFMMHTSTSPSYPIVASIETAAAMLRGNS
GRRLIQRSIERALDFRKEVQRLREESDGWFFDIWQPEEVGEAQCWPVSPGEQWHGFQDAD
DDHMFLDPVKVTILTPGMDEQGNMDSEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIG
IDKTRAMGLLRGLTEFKRSYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQH
QLSQLMLSAFDVLPEMKMTPHQAWQRQIKGEVETIELENLVGRISANMILPYPPGVPLLM
PGEMIVEESRAVLNFLLMLCSIGRHYPGFETDIHGAKRDEDGVYWVRVLKND