PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS05960 BWI76_RS05960 cysteine transport system periplasmic binding protein (269 amino acids)

SeqID: BWI76_RS05960 BWI76_RS05960 cysteine transport system periplasmic binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597400: probable binding protein component of ABC transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS05960 BWI76_RS05960 cysteine transport system periplasmic binding protein
MRIAKTKIALALGMLVLAAQAQADQLADIKAAGVVKVATFDANPPFGSVDPKTHKIVGYD
VDFAEALAKSLGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVIDFSTPYFVT
GQQFLVPAKSPDKLDDYSKARIGAVKGTTGEQALHQRFPQSRVLSYDDIPLALTALRNGN
VQAITQDSTILAGLLAEAPDKANFKIIPDLLSKEEIGVGVKKGEPTLLKAVNDELVKLEK
SGEAAKIYDVWFGPSTKTPQPRAFTIEAK