PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS06160 FitnessBrowser__Koxy:BWI76_RS06160 (476 amino acids)

SeqID: BWI76_RS06160 FitnessBrowser__Koxy:BWI76_RS06160
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS00123: ALKALINE_PHOSPHATASE Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 130752: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS06160 FitnessBrowser__Koxy:BWI76_RS06160
METIKVKLSALFIALIPLLGSPIIHAETTTAPVLENRAAQGDITTPGGARRLSGDQTEAL
RASLINKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYSLDKKT
GKPDYVTDSAASATAWTTGVKSYNGALGVDIHEKDHQTILELAKAAGLATGNVSTAELQD
ATPAALVAHVTSRKCYGPSVTSEKCASNALEKGGKGSITEQLLNARPDVTLGGGAKTFAE
TATAGEWQGKTLHDQAVARGYQIVTDASSLAAISQANQDKPLLGLFAEGNMPVRWEGPKA
SYHGNIDKPAVTCTPNPKRDASVPTLAQMTEKAIDLLSSSEKGFFLQVEGASIDKQDHAA
NPCGQIGETVDLDEAVQKALEFAKKEGNTLVIVTADHAHASQIIPADTKAPGLTQALNTK
DGAVMVMSYGNSEETSMEHTGTQLRIAAYGPHAANVVGLTDQTDLFYTMKAALNLK