PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS06240 FitnessBrowser__Koxy:BWI76_RS06240 (439 amino acids)

SeqID: BWI76_RS06240 FitnessBrowser__Koxy:BWI76_RS06240
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 60391845: Branched-chain amino acid transport system II carrier protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS06240 FitnessBrowser__Koxy:BWI76_RS06240
MTHQLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAIGFLITAVGLPVLTV
VALAKVGGGVESLSTPIGKVAGILLAVVCYLAVGPLFATPRTATVSFEVGIAPLTGDGAL
PLLIYSVIYFALVILVSLYPGKLLDTVGNFLAPLKIIALIILSVAAIVWPAGPLSHAMEA
YRTAPFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLT
LLYLALFRLGSDSGTLVEQSANGAAILHAYVQHTFGGAGSFMLAALIFIACLVTAVGLTC
ACAEFFAQYLPFSYRTLVFILGLFSMAVSNLGLSHLIQISIPVLTAIYPPCIALVVLSFT
RGWWHNSSRVIAPAMFISLMFGIIDGIKASAFADIMPSWTARLPLAEQGLAWLMPTAVMV
ILAVIWDRAAGRQMTSSAH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory