PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07040 FitnessBrowser__Koxy:BWI76_RS07040 (349 amino acids)

SeqID: BWI76_RS07040 FitnessBrowser__Koxy:BWI76_RS07040
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596449: probable L-malate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07040 FitnessBrowser__Koxy:BWI76_RS07040
MKVSRETLHQLIANKLNIAGLTHNHADIIADVLVYADARGIHSHGAVRVEYYAERIAKGG
TNRQPNFTFEKTGPCSGILHADNAAGQVAAKMGMEHAIEIARENGVAVVGIRRMGHSGAI
SYFVQQAARAGFIGLSLCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDDIITFDMATTVQ
AWGKILDARSRHETIPDSWAVDKNGAPTSDPFAVHALLPAAGPKGYGLMMMIDVLSGILL
NLPFGRQVSSMYDNLSQGRELGQLHIVINPAFFSSSALFRQHISDTMRELNAIAPAPGFN
QVYYPGQNLDINEKNSAVDGIEIVDEIYDYLVSDALYNRSYETHSPFAQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory