PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07270 BWI76_RS07270 ABC transporter ATP-binding protein (255 amino acids)

SeqID: BWI76_RS07270 BWI76_RS07270 ABC transporter ATP-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 71164840: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    6.29
    Cytoplasmic            3.70
    Periplasmic            0.01
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07270 BWI76_RS07270 ABC transporter ATP-binding protein
MSLLSVCHMTKRFGGLTAVDNVSLSINQGEIYGLIGPNGAGKTTCFNLITGLYPADSGEF
AIGGEAYFPSNIEKVTAAGIARTFQNVRLFNNMSVLENVMVGRHVRTRNGLWAAISRHKR
ARAEETQTRELAWHLLDYTGISQFAHYRACDLAYGHQRRLEIARALATEPRLLALDEPAA
GMNAAEKMALGELLLRIRDDGKTLLMIEHDVKLVMGICDRLMVLDYGKTLTSGTPDTVRR
DPAVIAAWLGGNIHV