PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07290 FitnessBrowser__Koxy:BWI76_RS07290 (626 amino acids)

SeqID: BWI76_RS07290 FitnessBrowser__Koxy:BWI76_RS07290
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 131486: PTS system beta-glucoside-specific EIIBCA component]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07290 FitnessBrowser__Koxy:BWI76_RS07290
MNYNETADKILHAVGGAENIRMLTHCATRLRMEFNDRAKVNDAQIGTLPGVISVVEKGGQ
FQIVIGNEVQQVYRRLNKALPEKKGPAGGDKNAKPAGIVARIISVISTTFTPVIPAITGA
GMIKALLAILKLTGVISETSSTYQLLNIIADAAFFFLPVLLAYGASLKFECNPILAMTLA
GVLLHPGIGQMLAAGKAVDFVGINVLLSDYAGSVLPIILTVWLMSWVERFAEKVSPSIIK
FFVKPMLILLITAPLALVVVGPAGILLNDLVAAGAGAIDRHASWLIPMLMGTLQPFLIIT
GTAWAMTPIATGQLSKSGYEMINGPGMLASNVAMGAATLCVALKTKNSNLRQLASSSGFT
ALLGITEPALYGVLLKFRRVLIAAMIGGGCAGVYAGVSGLVRYAFVSPGLAALPAFIGEN
PMNIVHALVTCAISIVVTFTLTWFIAFKDVPEEQEEVGEAPQPAVSPKNEGETEVFSPLR
GQVVALSEVNDDVFSGGLLGEGLAIRPEEGVLRAPFSGTVMMFLPSCHAVGLQSDSGLEL
LIHIGIDTVNLNGQHFSSTLKVGDRVEAGQELIRFDIPAIEQAGYDLITPVIVVNGDEQH
SLRLTAAAQVDYGEQLMVQSAKEAQA