PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07365 FitnessBrowser__Koxy:BWI76_RS07365 (413 amino acids)

SeqID: BWI76_RS07365 FitnessBrowser__Koxy:BWI76_RS07365
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3025166: Putative nucleoside transporter yegT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07365 FitnessBrowser__Koxy:BWI76_RS07365
MVTTTEGRESPRVAHRFLVPRLSLMMFMQFFIWGSWSVTLGLVMTRYEMSLLIGDAFSAG
PIASILSPFVLGMLVDRFFASQKVMAVMHLAGAVILWFVPQALVAQNGALLIGLLFGYTL
CYMPTLALTNNIAFHSLANVDKTFPVVRVFGTIGWIIAGIFIGVTGISDTTGIFSVAALC
SVALAVYSLTLPHTPAPAKGTPVQFRDLLCADAFALLKTRHFLIFSLCATLISIPLGTYY
AYTASYLADAGIADVSTAMSFGQMSEIFFMLVIPLLFRRLGVKYMLLIGMAAWFVRYAFF
ALGVSEEGRFLLYLGILLHGVCYDFFFVVGFIYTDRVAGEKVKGQAQSMIVMFTYGIGML
LGSQISGALYNHLVAGQSVPQAWVAFWWIPAVAAAVIALIFLFSFQYNEKESR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory