PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07630 FitnessBrowser__Koxy:BWI76_RS07630 (677 amino acids)

SeqID: BWI76_RS07630 FitnessBrowser__Koxy:BWI76_RS07630
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS01303: BCCT Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114921: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07630 FitnessBrowser__Koxy:BWI76_RS07630
MTDLSPSREKDKINPVVFYTSAGLILLFSLMTLFFSDFSAAWIGRTLNWVSRTFGWYYLL
AATLYIVFVVCIACSRFGSVKLGPEHSKPEFSVLSWAAMLFAAGIGIDLMFFSVAEPVTQ
YMQPPEGAGQTMEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYP
IFGKKINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFNIPDSLGAKAALIVL
SVIIATISVTSGVDKGIRILSELNVVLALGLILFILFMGDTEFLLNALVLNVGDYVNRFM
GMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVVGTLIIPFT
FTLLWLSVFGNSALYEIIHGNAAFAAEAVAHPERGFYNLLAQYPAFTFSASVATITGLLF
YVTSADSGALVLGNFTSKLKDINSDAPNWLRIFWSVVIGLLTLGMLMTNGISALQNATVI
MGLPFSFVIFFVMAGLYKSLKVEDYRRESANRDTAPRPLGVQDRLSWKKRLSRLMNYPGT
RYTRQMMETVCFPAMEEVAQELKLRGAYVELKSLPPEEGDSLGHLDLLVHMGDEQNFVYQ
IWPQQYSIPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNF
IHLHREAPGNSVTFPGM