PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS09460 FitnessBrowser__Koxy:BWI76_RS09460 (370 amino acids)

SeqID: BWI76_RS09460 FitnessBrowser__Koxy:BWI76_RS09460
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507606: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS09460 FitnessBrowser__Koxy:BWI76_RS09460
MTAFGKKWLTGLVTGALMAVSAGSLAAEQKTLHVYNWSDYIAPDTVANFEKETGIKVVYD
VFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLAAGVFQPLDKSKLPNWKNLDPEVLKLV
AKHDPDNKYAIPYLWATTGIGYNIDKVKAVLGKDAPLDSWDLVMKPENLEKLKSCGVSFL
DAPEEIFATVLNYLGKDPNSSKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICV
AIGWAGDVWQAANRAKEAKNGVNVSYFIPKEGALAFFDVFAMPADAKNKDEAYQFLNYLM
RPDVIAHISDHVYYANGNKASLPLVSEEIRNNPAIYPPADVFAKLFTLKVQDPKIDRVRT
RAWTKVKSGK