PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS10315 FitnessBrowser__Koxy:BWI76_RS10315 (430 amino acids)

SeqID: BWI76_RS10315 FitnessBrowser__Koxy:BWI76_RS10315
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00897: LACY_2 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 125941: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS10315 FitnessBrowser__Koxy:BWI76_RS10315
MFYLKNRNFWIFGAFCFFYFFIMGAVLPFFPIWLHDVNQLDQRQTGLVFASMALFALVFQ
PVFGFVTDKFGLKKHLLWMIIFLLLFLAPLFIYVFSPLLQSHFFLGALLCGIYLGLVCSG
GSPAIEAYIEKVSRRSQFEYGRARLFGCIGWAICASIVGYMFTINNQFAFWLASSFSLVL
AGLLYLFKPEENATLAVADGLALNQKPIKLKAALGLLKMRKFWCLVMYIVGVACVYDVFD
QQFANFFTSFFRDRHTGTQAFGYVTTPGEFLNAFIMFFAPPIINRIGGKNALLIAGMIMS
ARIIGSSLADSVTEVIILKTLHMFEVPFLLVGIFKYITTQFNVNLSASIYLWGFCFFKQL
SAIGMSYAAGMMYVTYGFKTSYLILGCTALLFTIISAFALSGKVRRATGQPAQDVSLSNI
KGEFGSEAQR