PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS10670 FitnessBrowser__Koxy:BWI76_RS10670 (358 amino acids)

SeqID: BWI76_RS10670 FitnessBrowser__Koxy:BWI76_RS10670
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 418517: Fructose-like permease IIC component 2]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS10670 FitnessBrowser__Koxy:BWI76_RS10670
MNELVQILKNTRQHLMTGVSHMIPFVVSGGILLAVSVMLYGKGAVPDAATDPNLKKLFDI
GVAGLTLMVPFLAAYIGYSISDRAALAPCAIGAWVGNSFGAGFFGALIAGIIGGLVVYYL
KKIPVHKVLRSVMPIFVIPIIGTFITAGIMMWGLGEPIGALTASLTGWLQGMREGSIVIL
AIIMGLMLAFDMGGPVNKVAYAFMLICVSQGVYSVVAIAAVGIAVPPLGMGLATLIGRKY
FSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVIPANMIGAAAGCVTAALLGAQCYAG
WGGLIVLPVVEGKGGFIAGLAVGAIVSAACVILLKALAKKKTSDAKADDEMDLDFEIN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory