PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS10770 FitnessBrowser__Koxy:BWI76_RS10770 (130 amino acids)

SeqID: BWI76_RS10770 FitnessBrowser__Koxy:BWI76_RS10770
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 586881: UPF0076 protein yabJ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS10770 FitnessBrowser__Koxy:BWI76_RS10770
MPKQVIIPPGTTTPIAPFVPGTLADGVVYVSGTLPFDKQNNVVYIGDPKAQTRHVLETIK
SVIETAGGSMEDVTFNSIFITDWKNYAAINEVYAEFFPGDKPARFCIQCGLVKPDALVEI
ATVAHIGKPA