PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS11225 FitnessBrowser__Koxy:BWI76_RS11225 (303 amino acids)

SeqID: BWI76_RS11225 FitnessBrowser__Koxy:BWI76_RS11225
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 90111128: manno(fructo)kinase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS11225 FitnessBrowser__Koxy:BWI76_RS11225
MYYGFDIGGSKIALGIFDKARRLQWEKRVATPKESYEAFLQAVEALVQEADQRFGCQGSV
GIGIPGMPETEDGTLYAANVPAASGRRLRADLSERLGRDVRLDNDANCFALSEAWDDEFT
QYPLVMGLILGTGVGGGLVLNGKSITGHRYITGEFGHIRLPVDALEVVGRDFPLTRCGCG
QLGCIENYLSGRGFAWLYQHFYQQSLTSPEIVALWQQGDAKAREHVERYLDLLAVCLGNI
LTIVDPDLLVLGGGLSNFTAITEGLAQRLPRHLLPVASVPRIERARHGDAGGMRGAAFLH
LTQ