PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS11860 FitnessBrowser__Koxy:BWI76_RS11860 (520 amino acids)

SeqID: BWI76_RS11860 FitnessBrowser__Koxy:BWI76_RS11860
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS11860 FitnessBrowser__Koxy:BWI76_RS11860
MQTSKPALELLTSDAIYRENPTALFHQICGARPATLLLESADIDSKDDLKSLLLVDSALR
ITALGDTVTIHALSANGTALLELLDSALPSGINNQRQPNSRVLTFPPVSALLDEDARLCS
LSVFDAFRLLQELVTVPQDEREAMFFGGLFAYDLVAGFEDLPSLESDTACPDYCFYLAET
LLVIDHQTKNTRIQASLFTPLESEKQRLLQRIAQLRQQLNEPPLPLPVTTVAEMRCDCDQ
SDEEYGAVVRKMQRAIRAGEIFQVVPSRRFSLPCPSPLAAYDVLKKSNPSPYMFFMQDND
FTLFGASPESSLKYDATNRQIEIYPIAGTRPRGRRADGSLDRDLDSRIELEMRTDHKELS
EHLMLVDLARNDLARICTPGSRYVADLTKVDRYSFVMHLVSRVVGELRRDLDVLHAYRAC
MNMGTLSGAPKVRAMQLIAAAEGKRRGSYGGAVGYFTAHGDLDTCIVIRSAYVQDGVATV
QAGAGIVLDSVPQSEADETRNKARAVLRAIAQAHHAKEIF