PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS11890 FitnessBrowser__Koxy:BWI76_RS11890 (785 amino acids)

SeqID: BWI76_RS11890 FitnessBrowser__Koxy:BWI76_RS11890
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596923: periplasmic beta-glucosidase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS11890 FitnessBrowser__Koxy:BWI76_RS11890
MSNDFNTTLAAMSAEEKVALLTGSGLWRTASLPQHGIEDIIMTDGTYGVRYSSAQIDGRE
KWSMDDFISVITQTADQASVAEPAAKGGSEALFSTSLPATCFPNGSSLACSWDVELVHQM
GQALGRECQQMGVGILLGPGINIRRTPLAGRGYEYYAEDPVVSGDIAAALINGLQQEGVG
ASLKHFAANNSEFRRTEMDSIIEERALREIYLAGFQRAIAKSRPWTVMSSYNRLNGVQTS
QDPFLLTQVLRDEWGYDGLVMSDWYGIKDRPASLMAGNDLAMPETRRDKQTLLAAIEAEE
VPMAVVDRACLRMLELLDKVQRHRRPQTRADFTAHHALAQRLAGESIVLLKNEEALLPLR
SEKTPRIAVLGKPAQEPVIQGSGCATTVPYLLDRPLDEIFDLAGDDFSVTWAVGAPDDLR
DDEQALAQACSVAQEADVAVLFVSTAVGEDGENGDRQDLHILPVHERLIREVAAVQPNIV
VVLANSDAVVMPWLGECKALLETFFAGQGMGRAVAEILFGKRNPCGKLTVTVPNSLEETP
AWLHYPGENLRHYYGEGLFVGYRYYDKRRLMPQFPFGFGLSYTRFAYDNIALSASRLGAD
ETLTVSFDLTNCGEYAGKEIVQLYVSAPKGELIREVQSLKAFSKVALAAGESRRVSLQLP
IAELACYHPGLGDWMVTPGIWQIRVGASSRDLPLTAEMEVDCPQRYVPLRDDNSLQQLIQ
QPEAFARVVTLIADKSQIPAEQVREKLIRLAPDLFCGLLIALTEFLALDIERDELNAVLA
GAHHC

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory