PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS13270 FitnessBrowser__Koxy:BWI76_RS13270 (790 amino acids)

SeqID: BWI76_RS13270 FitnessBrowser__Koxy:BWI76_RS13270
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Cytoplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS13270 FitnessBrowser__Koxy:BWI76_RS13270
MATDNAPRGFPRILQWLLAGLMLIIGLAIGILGAKLASVGGTFYFALMGLVMVIAAVLIF
RSRRGGIMLYAVAFVASIVWAISDAGWTYWPLFSRLFALGVLAFLCALVWPFLSRQPAKK
GPAFGLAAVIAVALLVSFAWMFKSQPLVSASEAVPVKPVAADEQQKNWAHWGNTTHGDRF
AALDQINKQNVDQLQVAWIAHTGDIPQSNGSGAEDQNTPLQIGDTLYVCTPYSKVLALDV
DSGKEKWRYDSKATAPNWQRCRGLGYYEDSQAQVSPAADAQPAACSRRLFLPTTDARLIA
IDADNGKLCDAFGDHGIVDLSIGMGEIKAGYYQQTSTPLVAGNVVVVGGRVADNFSTGEP
PGVVRAYDVHTGKLAWAWDPGNPALTGEPPAGQTYTRGTPNVWSAMSYDAKLNLIYLPTG
NATPDFFGGERTALDDKYSSSIVAVDATTGQVRWHYQTTHHDLWDFDLPSQPLLYDLPDG
KGGTTPVLVQTSKQGMIFMLNRATGEPVAKVEERPVPAGNVKGERYSPTQPYSVGMPMIG
NETLTESDMWGATPVDLLLCRIQFKEMRHQGVFTPPGEDRSLQYPGSLGGMNWGSVSVDP
NNSLIFVNDMRLGLANYMVPRAKVAKDASGIEMGIVPMEGTPFGAMRERFLSPLGIPCQK
PPFGTLSAVDLKTGKLVWQVPVGTVEDTGPLGIRMHMPIPIGMPTLGASLSTQSGLLFFA
GTQDFYLRAFDTANGKEIWKSRLPVGSQSGPMTYVSPKTGKQYIIINAGGARQSPDRGDY
IIAYALPEQK