PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS13705 FitnessBrowser__Koxy:BWI76_RS13705 (460 amino acids)

SeqID: BWI76_RS13705 FitnessBrowser__Koxy:BWI76_RS13705
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597714: toluate 1,2-dioxygenase alpha subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS13705 FitnessBrowser__Koxy:BWI76_RS13705
MQKTFARLKDKISNALIVDREKHIYRCHRSIFTDPQLFDFEMKHIFEGNWLFLAHESQIA
QPGDYYTLTLGRQPVIITRDKKNELHALINSCAHRGAMLCRRKTGNKNSLTCPFHGWTFS
NNGKLLKAKDESTGGYPDSFKQEGSHDLTKLPKFQSYRGFLFGSLNADVQPLEEYLGETR
KIIDLIVDQAPQGLEVLKGSSSYVYEGNWKLGAENGADGYHVSVVHWNYASTMSRRNYEA
EGTHAVDANGWSKSVGGGYGFENGHMLLWTRALNPEVRPVYEHRERLRAEFGESRADRMV
NETRNLCLYPNVYLMDQFSTQIRVIRPIAVDKTEVTIWCFAPRGESDQARALRIRQYEDF
FNVSGMGTPDDLEEFSACQRGYLGENLAWSDLSRGALHWVDGPDDHALQAGFSPQLSGVK
SEDEALYIAHHHHWQNVMLAALETERQRYDQSITQRVEVA