PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS14015 FitnessBrowser__Koxy:BWI76_RS14015 (490 amino acids)

SeqID: BWI76_RS14015 FitnessBrowser__Koxy:BWI76_RS14015
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS14015 FitnessBrowser__Koxy:BWI76_RS14015
MSKLNPILAGSAQSIDAYQQAIAQTSQAVAQWLQQPEMYQGKSVDELRERITLDFNEQGL
GNQAAIERAIEYFLKDSLSVHHPQCVAHLHCPSLVISQAAEVLINATNQSMDSWDQSPSA
TIIEIKLIEWLRAQVGYGAGDAGVFTSGGTQSNMMGLMLARDAFFARRGHSIQQDGLPGD
IRQYKVLCSENAHFSVQKNMALMGLGYRSVTLVKTDEFARMDVADLKAKIAEAQANGEQI
MAIVATAGTTDAGAIDPLREIAAVAAEHQIWLHVDAAWGGALLMSEKYRDRLDGIELVDS
ITLDFHKQFFQTISCGAFLLKEARHYELMRYQAAYLNSEFDEEHGVPNLVSKSLQTTRRF
DALKLWMGLEALGQKQYAEIIDHGVTMALNVADYVATQPTLELVMQPQLASVLFRSRPQQ
MAGSDDAAIALLNQRVGDALLASGRANVGVTEHNGVTCLKLTLLNPIVTLEDVKVLLSLV
ERTAQELLAQ