PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS15490 FitnessBrowser__Koxy:BWI76_RS15490 (487 amino acids)

SeqID: BWI76_RS15490 FitnessBrowser__Koxy:BWI76_RS15490
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61252084: Polyol:NADP oxidoreductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS15490 FitnessBrowser__Koxy:BWI76_RS15490
MENMLLTANATLPAYDRNRLIPRIVHLGFGAFHRAHQAVYADILATEHGSDWGYTEVNLI
GGEQQIADLQKQDLLYTVAEMSADAWTARVVGVVKQAMHAQVDGLESVLAKMCEPQVAIV
SLTITEKGYCHSPASGELQLDHPLIAADLQNPRQPKSAPGVVVEALARRKAAGLPAFSVM
SCDNMPENGHVMRNVICAYARAVDADLAEWITRNVTFPSTMVDRIVPAVTADTLDKIAQL
TGVRDPAAVACEPFRQWVIEDNFVAGRPQWEKAGAELVSDVLPFEEMKLRMLNGSHSFLA
YLGYLAGYQHINDCMQDANYRRAAHTLMLAEQAPTLSVKGVDLARYAGLLIERYSNPALK
HRTWQIAMDGSQKLPQRMLDSIRWHLADGGDFPLLAMGVAGWMRYVSGVDDQGQAIEISD
PMLPVITQTVQNSEDGEERVRALLGIEAIFGLSLPKESRFVNAVVRAYLSLQAHGAKATV
AAWAQAN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory