PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16700 FitnessBrowser__Koxy:BWI76_RS16700 (321 amino acids)

SeqID: BWI76_RS16700 FitnessBrowser__Koxy:BWI76_RS16700
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16700 FitnessBrowser__Koxy:BWI76_RS16700
MSHEYIMEVDGLKKHFPLRDGLFGQQTGELRAVDGVSFKIRRGTIFGLVGESGSGKTTVG
RTLLGLYEKTAGSVKFRGQELSELSPRVMRVLRPKIQLVFQDPYSSLNPRIRIGDAIGEA
MLEHKLCRREELYDKTIDVMRICGLAPQHYHRFPHEFSGGQRQRIGIARALILNPDFIIA
DEPISALDVSIQAQIINLFSDLRDDHGVTFLFISHDLGVVEHLCDDVAVMYLGQLVETAG
RDALFSRPLHPYTQALLAAVPTLDPDSEPLAVVQGEIPDPSRPPAGCRFSSRCPQASDRC
RREIPLLREVADGHRVACHAV