PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16820 BWI76_RS16820 iron ABC transporter (350 amino acids)

SeqID: BWI76_RS16820 BWI76_RS16820 iron ABC transporter
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1706787: Iron-uptake system permease protein feuC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16820 BWI76_RS16820 iron ABC transporter
MKSAARRAGFRPLACGGRHFLLRPAALKIAAGMLLVILLLALFGLTRGSFPMPSGTLFRA
LLGAENVAEQPRFILFDIRLPRLLMALLCGAMLGLAGAAMQSITRNGLADPGLIGVKEGA
SIVVLALVLFFPAVGVIWRPLAGMLGGVLVALLVLALARDCSRPRFILIGIGVSWTLAAA
VGIFMTTADVRDVQTAMIWLAGSLHAATWPLLAVAFCWALPGAMILFLTARAADAALLGD
RTAIGLGVRLQQLTLLRFFAPVLLTSASVSCVGSLGFVGLMAPHMARFLLRGGQVALLCG
SALIGALLVLATDTIGRLAFAPLQIPAGIVIALVGCPFFIVLLWRRRDAL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory