PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16895 FitnessBrowser__Koxy:BWI76_RS16895 (398 amino acids)

SeqID: BWI76_RS16895 FitnessBrowser__Koxy:BWI76_RS16895
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6686326: Putative 3-hydroxyphenylpropionic acid transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16895 FitnessBrowser__Koxy:BWI76_RS16895
MTQTTTASNSRLMVTVGLCFMVALMEGLDLQAAGIAAVGMAQAFALDKMQMGWIFSAGIL
GLLPGALAGGMLADRYGRKRILLGSVLLFGLFSIATALAWNYPTLLLARLLTGVGLGAAL
PNLIALTSEAAGPRFRGRAVSLMYCGVPIGAALAAALGFFGLAAAWQTVFWVGGIVPLLL
VPLLLRWLPESPVFQRSAQGVPLRALLAPGNATATLLLWLCYFFTLLVVYMLINWLPMLL
VGQGFSASEAAGVMFVLQFGAACGTLLLGALMDKLSPLWMSLLIYSGMLASLLALGTATS
LAAMLFSGFVAGLFATGGQSVLYALAPLFYRTEIRATGVGTAVAIGRLGAMSGPLLAGKM
LALGTGTVGVMAASAPGILLAGVAVFWLMNRQKRAALA