PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS17700 FitnessBrowser__Koxy:BWI76_RS17700 (582 amino acids)

SeqID: BWI76_RS17700 FitnessBrowser__Koxy:BWI76_RS17700
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 136182: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS17700 FitnessBrowser__Koxy:BWI76_RS17700
MTSPVSRRPATLPYALRLALGGAFVALATLTAQAEETRPIPQSPDILLGPLFNDVQSAKL
FSDQKTFADAIPNGDPLMILADYRMQKSQTSFDLRHFVELNFTLPRENDQYVPPKGQTLR
QHINGLWPVLTRSTVEVEKWDSLLPLPKPYVVPGGRFREVYYWDSYFTMLGLAESGHWDK
IEDMVTNFAAEIDAWGHIPNGNRTYYLSRSQPPFFPFMVELLATHDGDEALKKWLPQMEK
EYQYWMDGAEALEPGGASKRVVRMADGSLLNRYWDDNDTPRPESWLDDVTTAKNNPNRPA
TEIYRDLRSAAASGWDFSSRWMDNPQQLGTIRTTSIVPVDLNSLMFHMEKAIARASKAAG
DSAKAAQYDALANARQKALEKYLWNDKEGWYADYDLKSHKVRNQLTAAALFPLYVNAASS
ERAAKVAAATEARLLKPGGLTTTTVNSGQQWDAPNGWAPLQWVAAEGLQKYGQQKIAMEV
SWRFLSNVQHTYNSEQKLVEKYDVSSTGTGGGGGEYPLQDGFGWTNGVTLKMLDLVCPKE
KPCDSVPATRPAANDDTSKATDNAAQPAANNSIAPGDKKVAQ