PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS19190 FitnessBrowser__Koxy:BWI76_RS19190 (326 amino acids)

SeqID: BWI76_RS19190 FitnessBrowser__Koxy:BWI76_RS19190
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS19190 FitnessBrowser__Koxy:BWI76_RS19190
MSLLKVNRLAVTGGEDIALVDNVSFTLEAGEMLGLVGESGSGKTVTCRALMRLLPGDGLR
ISGGEVVLDGRDILPLSEGQMSAVRGREIGMIFQNPTSHLNPVMTIGEQIAESRRLHFAA
NRRQAREDALALLRQVGIPDPQNRLNSYPHEFSGGMRQRAMIAVALASEPRLLIADEPTT
ALDVTVQMQILRLLSDLRAELGLAVIMITHDLGVVAQTCDRIAVMYGGRLCEVGDKREVL
AGPLHPYTRGLIDCQPASEGGRGRLTIIDGQPPSADHFPSGCRFHPRCRRADEACLQPPP
LHYGQDRHSHAVACHHRLPTLTRQEG