PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS19970 FitnessBrowser__Koxy:BWI76_RS19970 (419 amino acids)

SeqID: BWI76_RS19970 FitnessBrowser__Koxy:BWI76_RS19970
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 46397429: Anaerobic glycerol-3-phosphate dehydrogenase subunit B]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS19970 FitnessBrowser__Koxy:BWI76_RS19970
MKFDCAIIGGGLAGLLCGLALNQRGLRSVIISRGQSALHFSSASLDLLSTLPNGETVTDV
AHGIGQLARQLSEHPYARLGAERVMGYASQAQALFADCGIAMQGEASQPHLRVTPLGTLR
AAWLSPQEIATAPLPANGVCVVGISGFGDFQPHLAAASLNQHGVHAEAQEIDLPLLDVLR
DSPSEFRAANIARRLDDETQWPALLAALRPLAQRHRFIIMPACFGLADDRLYQWLQQRLP
CPLRLLPTLPPSVPGMRLHAQLQRHFIRGGGTWLTGDEVINISQQNGIVNAIWTRNHGDI
PLRPRFAVLASGSFFSNGLVAERSGVREPILGLDLQQTLPRERWYQQDFFASQPWQRFGL
KTDAALRPQLQGQTLENLFAVGSILGGFDAIALGCGGGVCAVTALHAARLIGELAGGES